JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRD4_chr19_15230519_15337539	0/0	c0034	4089	1	0	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0035	4089	1	0	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0036	4089	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD7_chr16_50310957_50373988	1/0	c0001	1956	288	64	71	106	13	33	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/1	c0002	1956	95	13	8	66	3	4	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0003	1956	6	6	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0004	1956	4	4	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0005	1956	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0006	1956	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0007	1956	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0008	1956	1	0	0	1	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0009	1956	1	0	0	0	0	1	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0010	1956	1	0	0	1	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0011	1956	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0012	1956	1	0	1	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	c0013	1956	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD8_chr5_138134770_138183630	0/0	c0001	3708	190	47	33	87	5	18	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/1	c0002	3708	117	8	28	62	5	13	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0003	3708	27	8	7	2	2	8	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	1/0	c0004	3708	10	9	0	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0005	3708	9	9	0	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0006	3708	9	0	0	9	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0007	3708	4	3	1	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0008	3708	3	0	1	0	2	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0009	3708	3	2	1	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0010	3708	1	0	0	1	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0011	3708	1	0	1	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0012	3708	1	0	0	1	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0013	3708	1	0	0	1	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0014	3708	1	0	0	1	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	c0015	3708	1	0	0	0	0	1	copy fasta	BRD8	chr5	138134770	138183630
BRD9_chr5_858741_897801	1/1	c0001	1794	314	62	63	138	9	40	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0002	1794	20	12	6	0	0	2	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0003	1794	9	8	1	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0004	1794	7	6	1	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0005	1794	3	3	0	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0006	1794	3	0	0	3	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0007	1794	2	0	0	2	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0008	1794	1	0	0	1	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0009	1794	1	0	1	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0010	1794	1	0	0	0	1	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0011	1794	1	0	0	0	0	1	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0012	1794	1	1	0	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	c0013	1794	1	0	0	0	0	1	copy fasta	BRD9	chr5	858741	897801
BRDT_chr1_91944401_92019421	0/1	c0001	2844	152	36	32	59	8	16	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0002	2844	84	16	13	48	0	7	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0003	2844	33	4	8	7	3	11	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0004	2844	20	12	5	1	1	1	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	1/0	c0005	2844	10	9	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0006	2844	3	3	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421