JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZDHHC8_chr22_20126804_20153007	0/0	c0007	2298	2	2	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0008	2298	2	0	2	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0009	2298	2	0	2	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0010	2298	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0011	2298	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0012	2298	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0013	2298	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC9_chrX_129798288_129848886	1/1	c0001	1095	252	74	32	117	5	22	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	c0002	1095	3	3	0	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	c0003	1095	1	0	0	1	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	c0004	1095	1	1	0	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	c0005	1096	1	0	0	1	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZEB1_chr10_31314216_31534804	1/1	c0001	3378	149	50	19	64	0	14	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0002	3378	21	15	2	2	0	2	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0003	3378	9	9	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0004	3378	4	4	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0005	3378	3	0	0	3	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0006	3375	2	2	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0007	3378	2	1	1	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0008	3378	2	2	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0009	3378	1	0	0	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0010	3378	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0011	3378	1	0	0	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0012	3378	1	0	0	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0013	3378	1	0	1	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0014	3378	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0015	3378	1	0	1	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	c0016	3378	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB2_chr2_144379081_144525119	1/1	c0001	3645	229	68	31	87	6	35	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0002	3645	4	0	0	4	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0003	3645	4	4	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0004	3645	2	2	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0005	3645	2	0	2	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0006	3645	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0007	3645	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0008	3645	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0009	3645	1	0	1	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0010	3645	1	0	0	0	0	1	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0011	3645	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	c0012	3645	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZER1_chr9_128724786_128776927	1/0	c0001	2301	222	66	29	97	4	25	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/1	c0002	2301	99	10	30	35	4	19	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	c0003	2301	3	3	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	c0004	2301	2	2	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	c0005	2301	1	0	1	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	c0006	2301	1	0	0	1	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	c0007	2301	1	0	0	1	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	c0008	2301	1	1	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZFAND1_chr8_81696337_81726300	1/1	c0001	807	376	98	64	165	12	35	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	c0002	807	1	0	0	0	0	1	copy fasta	ZFAND1	chr8	81696337	81726300