JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFAND1_chr8_81696337_81726300	0/0	c0003	807	1	0	0	1	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND2A_chr7_1147907_1165196	1/1	c0001	438	394	87	63	191	14	37	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	c0002	438	24	4	10	0	4	6	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	c0003	438	10	3	3	3	0	1	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	c0004	438	2	0	0	2	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	c0005	438	1	0	0	1	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	c0006	438	1	0	0	1	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2B_chr2_219201782_219214648	1/1	c0001	774	410	90	79	177	16	46	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND2B_chr2_219201782_219214648	0/0	c0002	774	3	0	3	0	0	0	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND2B_chr2_219201782_219214648	0/0	c0003	774	2	2	0	0	0	0	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND2B_chr2_219201782_219214648	0/0	c0004	774	1	0	0	1	0	0	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND3_chr6_37814727_38159624	1/1	c0001	684	314	92	53	116	16	35	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	c0002	684	2	0	1	0	0	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	c0003	684	1	0	0	0	0	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	c0004	684	1	0	0	0	0	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND4_chr10_45610500_45677772	1/1	c0001	2184	274	53	52	127	9	31	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0002	2184	39	2	20	8	4	5	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0003	2184	31	2	0	24	3	2	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0004	2184	16	6	1	8	0	1	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0005	2184	12	12	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0006	2184	8	7	1	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0007	2184	4	0	0	4	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0008	2184	2	0	2	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0009	2184	1	0	1	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0010	2184	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0011	2184	1	0	0	1	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0012	2184	1	0	0	0	0	1	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0013	2184	1	0	0	1	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0014	2184	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0015	2184	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0016	2184	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0017	2184	1	0	1	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0018	2184	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0019	2184	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	c0020	2184	1	0	0	1	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND5_chr9_72346413_72370208	0/1	c0001	642	365	74	74	172	14	30	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	1/0	c0002	642	23	22	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND6_chr15_80054676_80143393	1/1	c0001	627	373	91	70	150	18	42	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	c0002	627	1	1	0	0	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAT_chr8_134472788_134718031	0/1	c0001	3732	42	5	5	23	3	5	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0002	3732	31	5	6	20	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0003	3732	21	9	10	0	0	2	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	1/0	c0004	3732	18	5	3	5	1	3	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0005	3732	14	3	2	8	0	1	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0006	3732	14	1	1	12	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0007	3732	13	0	1	5	2	5	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0008	3732	9	3	3	2	1	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0009	3732	7	1	4	1	0	1	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0010	3732	7	0	1	4	0	2	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0011	3732	6	0	3	0	0	3	copy fasta	ZFAT	chr8	134472788	134718031