JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFAT_chr8_134472788_134718031	0/0	c0062	3732	1	0	0	1	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	c0063	3732	1	1	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFC3H1_chr12_71604599_71668848	1/0	c0001	5970	129	34	17	61	0	16	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/1	c0002	5970	114	32	20	37	8	16	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0003	5970	38	0	0	33	5	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0004	5970	10	10	0	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0005	5970	8	0	4	2	0	2	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0006	5970	7	7	0	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0007	5970	2	0	1	0	1	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0008	5970	2	1	1	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0009	5970	2	0	0	0	0	2	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0010	5970	2	0	0	2	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0011	5970	1	1	0	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0012	5970	1	0	1	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0013	5970	1	0	0	1	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0014	5970	1	1	0	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0015	5970	1	0	0	1	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0016	5970	1	0	0	0	0	1	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0017	5970	1	1	0	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0018	5970	1	0	0	1	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0019	5970	1	1	0	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	c0020	5970	1	0	0	0	0	1	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFHX2_chr14_23515857_23556765	1/0	c0001	7719	188	14	36	105	8	24	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0002	7719	51	9	15	24	0	3	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0003	7719	27	26	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/1	c0004	7719	24	0	4	10	5	4	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0005	7719	10	1	2	6	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0006	7719	8	8	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0007	7719	7	5	2	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0008	7719	5	4	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0009	7719	4	4	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0010	7719	4	0	0	0	0	4	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0011	7719	3	3	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0012	7719	3	2	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0013	7719	3	3	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0014	7719	3	3	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0015	7719	3	0	1	2	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0016	7719	2	0	0	1	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0017	7719	2	2	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0018	7719	2	2	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0019	7719	2	0	2	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0020	7719	2	0	0	2	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0021	7719	2	0	0	2	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0022	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0023	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0024	7719	1	0	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0025	7719	1	0	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0026	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0027	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0028	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765