JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFHX2_chr14_23515857_23556765	0/0	c0029	7719	1	0	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0030	7719	1	0	0	0	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0031	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0032	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0033	7719	1	0	0	0	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0034	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0035	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0036	7719	1	0	0	0	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0037	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0038	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0039	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0040	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0041	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0042	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0043	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0044	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0045	7719	1	0	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0046	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0047	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0048	7719	1	0	0	0	1	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0049	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0050	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0051	7719	1	0	0	0	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0052	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0053	7719	1	0	0	0	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0054	7719	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0055	7719	1	0	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	c0056	7719	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX3_chr16_72777885_73053128	0/0	c0001	11112	25	6	6	10	1	2	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0002	11112	16	7	2	4	0	3	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0003	11109	11	1	3	7	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0004	11112	6	5	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0005	11112	6	0	2	4	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0006	11112	5	0	3	0	0	2	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0007	11112	5	0	5	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0008	11115	4	4	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0009	11112	4	0	0	3	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0010	11109	4	0	0	3	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0011	11109	4	0	2	1	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0012	11112	4	0	0	2	2	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0013	11112	4	1	1	0	2	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0014	11112	3	2	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0015	11112	3	0	2	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0016	11112	3	3	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0017	11118	3	0	0	3	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0018	11109	3	0	0	3	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0019	11109	3	0	0	3	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0020	11112	3	0	0	1	1	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0021	11112	3	0	0	3	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0022	11112	3	2	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128