JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFHX3_chr16_72777885_73053128	0/0	c0073	11085	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0074	11115	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0075	11109	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0076	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0077	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0078	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0079	11103	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0080	11112	1	0	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0081	11112	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0082	11112	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0083	11112	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0084	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0085	11118	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0086	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0087	11115	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0088	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0089	11112	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0090	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0091	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0092	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0093	11109	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0094	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0095	11118	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0096	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0097	11103	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0098	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0099	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0100	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0101	11106	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0102	11106	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0103	11115	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0104	11118	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	1/0	c0105	11112	1	0	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0106	11115	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0107	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0108	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0109	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0110	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0111	11112	1	0	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0112	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0113	11112	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0114	11112	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0115	11112	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0116	11115	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0117	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0118	11112	1	0	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0119	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0120	11112	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0121	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0122	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128