JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFHX3_chr16_72777885_73053128	0/0	c0123	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0124	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0125	11109	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0126	11118	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0127	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0128	11112	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0129	11112	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0130	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0131	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0132	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0133	11112	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0134	11115	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0135	11112	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	c0136	11112	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX4_chr8_76676247_76872281	0/0	c0001	10851	25	2	1	21	1	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0002	10848	23	20	1	0	0	2	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	1/0	c0003	10851	17	0	3	9	2	2	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0004	10851	13	2	1	7	0	3	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0005	10848	12	1	3	8	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0006	10851	11	3	0	8	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0007	10848	8	7	0	0	1	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0008	10851	8	1	4	3	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0009	10849	5	3	1	0	0	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0010	10851	5	0	0	5	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0011	10851	5	5	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0012	10852	5	3	1	0	0	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0013	10849	5	0	2	3	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0014	10852	4	0	0	4	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0015	10851	4	2	1	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0016	10849	4	4	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0017	10851	3	0	0	3	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0018	10852	3	0	0	3	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0019	10852	3	0	0	1	0	2	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0020	10848	3	0	0	3	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0021	10851	3	0	0	3	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0022	10852	3	0	1	1	0	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0023	10848	2	1	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0024	10851	2	0	0	0	0	2	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0025	10851	2	0	0	2	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0026	10852	2	0	0	2	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0027	10848	2	2	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0028	10851	2	1	0	0	0	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0029	10849	2	1	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0030	10852	2	0	0	2	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0031	10851	2	0	0	2	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0032	10848	2	0	0	2	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0033	10851	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0034	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0035	10848	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0036	10851	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281