JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFHX4_chr8_76676247_76872281	0/0	c0037	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0038	10851	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0039	10848	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0040	10848	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0041	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0042	10851	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0043	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0044	10852	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0045	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0046	10852	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0047	10851	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0048	10849	1	0	0	0	0	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0049	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0050	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0051	10851	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0052	10851	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0053	10851	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0054	10851	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0055	10851	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/1	c0056	10851	1	0	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0057	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0058	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0059	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0060	10848	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0061	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0062	10849	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0063	10851	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0064	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0065	10851	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0066	10848	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0067	10851	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0068	10852	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0069	10851	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0070	10852	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0071	10851	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0072	10852	1	0	0	0	0	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0073	10849	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0074	10849	1	0	0	0	0	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0075	10851	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0076	10851	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0077	10851	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0078	10851	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0079	10851	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0080	10851	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0081	10852	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0082	10848	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0083	10851	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	c0084	10851	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFP14_chr19_36329453_36384201	1/1	c0001	1602	340	76	64	155	12	31	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	c0002	1602	8	8	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201