JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRDT_chr1_91944401_92019421	0/0	c0007	2844	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0008	2844	1	0	0	0	0	1	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0009	2844	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0010	2844	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0011	2844	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0012	2844	1	0	1	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0013	2844	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0014	2844	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0015	2844	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0016	2821	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0017	2844	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0018	2844	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0019	2844	1	0	1	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0020	2844	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0021	2844	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	c0022	2844	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRF1_chr14_105204286_105306001	1/1	c0001	2034	69	39	16	8	2	2	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	c0002	2034	2	2	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	c0003	2034	1	1	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF2_chr8_37838268_37854861	1/1	c0001	1260	338	90	68	126	15	37	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0002	1260	24	0	3	21	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0003	1260	8	0	0	6	0	2	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0004	1260	2	0	0	2	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0005	1260	2	0	0	0	0	2	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0006	1260	1	1	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0007	1260	1	0	0	0	0	1	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0008	1260	1	0	0	0	1	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0009	1260	1	0	0	1	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0010	1260	1	0	1	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	c0011	1260	1	1	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRI3BP_chr12_124988645_125036231	1/1	c0001	756	199	60	42	66	10	19	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	c0002	759	184	29	41	94	2	18	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	c0003	762	15	1	0	9	2	3	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	c0004	759	6	0	0	6	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	c0005	756	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	c0006	756	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	c0007	756	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	c0008	759	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	c0009	759	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	c0010	756	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3_chr7_98276686_98296545	1/1	c0001	378	398	92	67	180	12	45	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	c0002	378	10	0	0	9	0	1	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	c0003	378	2	0	0	2	0	0	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	c0004	378	2	2	0	0	0	0	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	c0005	378	1	0	1	0	0	0	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	c0006	349	1	0	0	1	0	0	copy fasta	BRI3	chr7	98276686	98296545
BRICD5_chr16_2204253_2215863	0/1	c0001	687	218	35	38	103	13	28	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	1/0	c0002	687	139	39	23	60	2	14	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0003	687	33	10	19	0	3	1	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0004	687	16	0	0	16	0	0	copy fasta	BRICD5	chr16	2204253	2215863