JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFP30_chr19_37626006_37660465	0/0	c0002	1560	9	9	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0003	1560	4	4	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0004	1560	4	4	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0005	1560	2	0	2	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0006	1560	2	0	0	2	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0007	1560	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0008	1560	1	0	0	0	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0009	1560	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0010	1560	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0011	1560	1	0	0	0	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	c0012	1560	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP36L1_chr14_68782662_68798067	1/1	c0001	1017	420	80	78	196	16	48	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	c0002	1017	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	c0003	1017	1	1	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	c0004	1017	1	1	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	c0005	1017	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L2_chr2_43217402_43231606	1/1	c0001	1485	212	14	40	128	6	22	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0002	1485	145	57	25	46	5	12	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0003	1485	16	15	1	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0004	1485	15	6	0	1	0	8	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0005	1485	11	0	9	0	0	2	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0006	1485	6	0	0	6	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0007	1485	5	5	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0008	1485	4	0	2	0	0	2	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0009	1491	3	0	0	0	1	2	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0010	1485	2	0	0	2	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0011	1485	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0012	1485	1	1	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0013	1485	1	0	0	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0014	1485	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0015	1485	1	0	1	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0016	1485	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0017	1485	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0018	1485	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	c0019	1485	1	0	0	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36_chr19_39401847_39414407	1/0	c0001	981	352	76	65	151	16	43	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	c0002	981	24	4	6	11	2	1	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/1	c0003	981	16	1	3	11	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	c0004	981	7	7	0	0	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	c0005	981	3	0	0	3	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	c0006	981	2	0	2	0	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	c0007	981	1	1	0	0	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	c0008	981	1	1	0	0	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP37_chr9_113033377_113061724	0/1	c0001	1893	240	26	51	134	8	20	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	1/0	c0002	1893	206	55	28	92	6	24	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	c0003	1893	4	0	4	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	c0004	1893	1	0	1	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	c0005	1893	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	c0006	1893	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	c0007	1893	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724