JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFP3_chr17_5073467_5101374	1/1	c0001	1509	398	93	63	191	13	36	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	c0002	1509	3	0	0	3	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	c0003	1509	1	0	1	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	c0004	1509	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	c0005	1509	1	0	0	0	0	1	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	c0006	1509	1	0	0	0	1	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	c0007	1509	1	0	0	0	0	1	copy fasta	ZFP3	chr17	5073467	5101374
ZFP41_chr8_143241939_143267705	0/1	c0001	597	180	35	40	71	9	24	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	1/0	c0002	597	112	42	20	24	6	19	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0003	597	10	10	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0004	597	4	4	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0005	597	2	2	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0006	597	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0007	597	1	0	0	0	1	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0008	597	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0009	597	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0010	597	1	0	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0011	597	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0012	597	1	0	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	c0013	597	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP42_chr4_187990771_188010046	1/1	c0001	933	421	77	76	201	15	50	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	c0002	933	11	10	1	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	c0003	933	7	4	3	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	c0004	933	3	0	0	3	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	c0005	933	2	2	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	c0006	933	1	0	0	1	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	c0007	933	1	1	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	c0008	933	1	0	0	1	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	c0009	933	1	0	0	0	1	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP57_chr6_29667483_29686152	0/1	c0001	1611	371	64	80	179	10	37	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0002	1611	20	0	0	19	0	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0003	1611	14	11	2	0	0	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0004	1611	9	0	5	2	1	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0005	1611	7	6	1	0	0	0	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0006	1611	5	0	0	2	1	2	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0007	1611	4	4	0	0	0	0	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0008	1611	2	0	0	0	0	2	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0009	1611	1	0	0	0	0	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0010	1611	1	0	0	0	0	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	c0011	1611	1	1	0	0	0	0	copy fasta	ZFP57	chr6	29667483	29686152
ZFP62_chr5_180842611_180866276	0/0	c0001	2702	249	22	60	129	10	28	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	1/1	c0002	2702	55	31	13	0	2	7	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0003	2702	46	29	3	12	0	2	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0004	2702	30	0	0	27	0	3	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0005	2702	6	6	0	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0006	2702	2	0	0	2	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0007	2702	2	0	0	0	0	2	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0008	2702	2	2	0	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0009	2702	1	0	0	1	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0010	2702	1	0	0	1	0	0	copy fasta	ZFP62	chr5	180842611	180866276