JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFP62_chr5_180842611_180866276	0/0	c0011	2702	1	0	0	1	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0012	2702	1	0	0	1	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0013	2702	1	1	0	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0014	2702	1	1	0	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0015	2702	1	1	0	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	c0016	2702	1	1	0	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP64_chr20_52146278_52196779	1/1	c0001	2046	210	36	39	91	16	26	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0002	2046	66	6	16	32	2	10	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0003	2046	50	12	12	23	0	3	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0004	2046	18	15	3	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0005	2046	3	3	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0006	2046	3	3	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0007	2046	2	2	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0008	2046	2	2	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0009	2046	2	2	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0010	2046	1	0	0	0	0	1	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0011	2046	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0012	2046	1	0	0	1	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0013	2046	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0014	2046	1	0	0	1	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0015	2046	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0016	2046	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	c0017	2046	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP69B_chr1_40445476_40468715	1/1	c0001	1605	329	86	46	161	8	26	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0002	1605	92	2	13	57	4	16	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0003	1605	23	0	14	9	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0004	1605	9	3	3	0	2	1	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0005	1605	3	3	0	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0006	1605	2	0	1	0	1	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0007	1605	2	2	0	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0008	1605	1	1	0	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0009	1605	1	0	0	0	1	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0010	1605	1	0	0	0	0	1	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0011	1605	1	1	0	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0012	1605	1	0	1	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0013	1605	1	0	0	1	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0014	1605	1	1	0	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	c0015	1605	1	1	0	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69_chr1_40472290_40501343	1/1	c0001	1581	370	70	57	191	13	37	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	c0002	1581	13	7	4	0	2	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	c0003	1581	13	2	1	7	1	2	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	c0004	1581	2	2	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	c0005	1581	2	2	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	c0006	1581	2	0	0	0	2	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	c0007	1581	1	1	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	c0008	1581	1	0	0	0	0	1	copy fasta	ZFP69	chr1	40472290	40501343
ZFP82_chr19_36383630_36423644	1/1	c0001	1599	377	88	68	169	12	38	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	c0002	1599	5	5	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	c0003	1625	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	c0004	1599	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644