JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFPM1_chr16_88448280_88542031	0/0	c0068	3021	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0069	3015	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0070	3015	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0071	3015	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0072	3015	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0073	3015	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0074	2940	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0075	3018	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0076	3017	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0077	3016	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0078	3015	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0079	3015	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0080	3015	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0081	3015	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0082	3015	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0083	3017	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0084	3015	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0085	2940	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0086	3015	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0087	3016	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0088	3015	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0089	3015	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/1	c0090	3015	1	0	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0091	3015	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0092	3015	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM2_chr8_105313438_105809539	1/0	c0001	3456	48	17	13	7	0	10	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0002	3456	11	3	1	6	0	1	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0003	3456	11	7	2	0	0	2	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0004	3456	8	8	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0005	3456	3	0	0	0	0	3	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0006	3456	1	0	0	0	0	1	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0007	3456	1	0	0	1	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/1	c0008	3456	1	0	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0009	3456	1	0	0	0	0	1	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0010	3456	1	0	1	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0011	3456	1	0	1	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0012	3456	1	0	1	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0013	3456	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0014	3456	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0015	3456	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	c0016	3456	1	0	1	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFR2_chr19_3799024_3874038	0/0	c0001	2820	122	30	20	66	4	2	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	1/0	c0002	2820	117	20	26	50	1	19	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/1	c0003	2820	86	18	19	28	4	16	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0004	2820	9	0	4	4	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0005	2820	9	1	1	7	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0006	2820	6	2	0	4	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0007	2820	4	0	0	4	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0008	2820	4	0	2	0	0	2	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0009	2820	4	0	2	0	2	0	copy fasta	ZFR2	chr19	3799024	3874038