JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFR2_chr19_3799024_3874038	0/0	c0010	2820	3	3	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0011	2820	2	0	0	2	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0012	2820	2	0	2	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0013	2820	2	2	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0014	2820	2	0	0	2	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0015	2820	2	0	0	2	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0016	2820	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0017	2820	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0018	2820	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0019	2820	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0020	2820	1	0	0	0	1	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0021	2820	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0022	2820	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0023	2820	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0024	2820	1	0	0	0	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0025	2820	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0026	2820	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0027	2820	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0028	2820	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0029	2820	1	0	0	0	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0030	2820	1	0	0	0	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0031	2820	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0032	2820	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0033	2820	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0034	2820	1	0	0	0	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0035	2820	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0036	2820	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0037	2820	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0038	2820	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	c0039	2820	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR_chr5_32349350_32449740	0/0	c0001	3225	219	72	32	89	6	20	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/1	c0002	3225	106	5	18	65	6	11	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	1/0	c0003	3225	44	5	13	20	0	5	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	c0004	3225	6	6	0	0	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	c0005	3225	2	0	0	2	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	c0006	3225	2	0	0	0	0	2	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	c0007	3225	1	0	0	1	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	c0008	3225	1	0	1	0	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	c0009	3225	1	0	0	1	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFTA_chr11_63754892_63773775	1/1	c0001	2037	184	31	41	69	14	27	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0002	2037	58	46	5	0	1	6	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0003	2037	3	0	0	3	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0004	2037	2	0	0	0	0	2	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0005	2052	2	2	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0006	2037	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0007	2037	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0008	2037	1	0	0	0	0	1	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0009	2037	1	1	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0010	2037	1	0	0	0	0	1	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	c0011	2037	1	0	0	0	0	1	copy fasta	ZFTA	chr11	63754892	63773775