JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFYVE19_chr15_40802089_40820084	0/0	c0006	1416	10	10	0	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0007	1416	6	0	0	6	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0008	1421	1	0	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0009	1416	1	0	0	1	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0010	1416	1	1	0	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0011	1416	1	1	0	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0012	1416	1	1	0	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0013	1416	1	0	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0014	1416	1	0	0	1	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0015	1421	1	0	0	1	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0016	1421	1	0	0	0	0	1	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0017	1421	1	0	0	1	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE1_chr14_72964451_73032106	1/1	c0001	2334	191	25	38	98	8	20	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0002	2334	61	32	17	3	1	8	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0003	2334	59	15	5	30	2	7	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0004	2334	43	2	7	32	0	2	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0005	2334	6	0	2	2	1	1	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0006	2334	3	3	0	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0007	2334	2	0	0	2	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0008	2334	2	2	0	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0009	2334	2	1	1	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0010	2334	1	0	0	1	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0011	2334	1	1	0	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0012	2334	1	0	0	1	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0013	2334	1	0	0	1	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	c0014	2334	1	1	0	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE21_chr14_103710810_103738664	0/1	c0001	705	391	72	65	193	16	44	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	1/0	c0002	705	53	20	17	11	2	2	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	c0003	705	3	0	3	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	c0004	705	3	3	0	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	c0005	705	2	0	0	2	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	c0006	705	2	0	0	2	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	c0007	705	2	2	0	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	c0008	705	1	0	1	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	c0009	705	1	1	0	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE26_chr14_67741522_67821590	0/1	c0001	7620	127	36	26	45	4	15	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0002	7620	16	0	0	16	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0003	7620	14	1	9	0	3	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0004	7620	14	2	0	12	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0005	7620	13	1	6	0	2	4	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0006	7620	10	10	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	1/0	c0007	7620	9	6	2	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0008	7620	7	1	4	1	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0009	7620	7	7	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0010	7620	6	0	5	0	1	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0011	7620	6	4	1	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0012	7620	4	3	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0013	7620	4	4	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0014	7620	3	3	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0015	7620	3	2	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590