JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFYVE26_chr14_67741522_67821590	0/0	c0016	7620	3	0	2	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0017	7620	3	1	1	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0018	7620	3	3	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0019	7620	2	0	1	0	1	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0020	7620	2	1	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0021	7620	2	0	2	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0022	7620	2	0	0	0	0	2	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0023	7587	1	0	0	0	1	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0024	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0025	7620	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0026	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0027	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0028	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0029	7620	1	0	0	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0030	7620	1	0	0	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0031	7620	1	0	0	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0032	7620	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0033	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0034	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0035	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0036	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0037	7620	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0038	7620	1	0	0	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0039	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0040	7620	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0041	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0042	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0043	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0044	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0045	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0046	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0047	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0048	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0049	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0050	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0051	7620	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	c0052	7620	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE27_chr10_97732128_97765895	0/1	c0001	1236	238	77	33	87	9	31	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	1/0	c0002	1236	132	11	23	82	4	11	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	c0003	1236	17	1	7	8	1	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	c0004	1236	6	6	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	c0005	1236	2	0	0	2	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	c0006	1236	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	c0007	1236	1	0	1	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	c0008	1236	1	0	0	1	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	c0009	1236	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	c0010	1236	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE28_chr4_2264597_2423645	0/0	c0001	2664	68	17	11	32	1	7	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0002	2664	38	6	6	16	0	10	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0003	2664	36	11	5	17	0	3	copy fasta	ZFYVE28	chr4	2264597	2423645