JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRICD5_chr16_2204253_2215863	0/0	c0005	687	10	9	1	0	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0006	687	4	4	0	0	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0007	687	3	0	2	0	0	1	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0008	687	2	0	0	2	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0009	687	1	0	0	1	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0010	687	1	0	0	1	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0011	687	1	0	0	1	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0012	687	1	0	1	0	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0013	687	1	0	0	1	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0014	687	1	0	0	0	0	1	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0015	687	1	1	0	0	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0016	687	1	0	0	0	0	1	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	c0017	687	1	0	0	1	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRINP1_chr9_119161629_119374435	1/1	c0001	2286	88	17	20	27	6	16	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0002	2286	70	7	21	27	5	10	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0003	2286	45	37	7	0	1	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0004	2286	10	7	3	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0005	2286	5	5	0	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0006	2286	5	4	1	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0007	2286	4	0	4	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0008	2286	2	0	0	2	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0009	2286	1	1	0	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0010	2286	1	0	0	1	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0011	2286	1	0	1	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0012	2286	1	0	1	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0013	2286	1	0	1	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0014	2286	1	0	1	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	c0015	2286	1	0	0	1	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP2_chr1_177165958_177287422	1/0	c0001	2352	167	40	36	65	5	20	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/1	c0002	2352	69	19	10	33	2	4	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0003	2352	4	4	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0004	2352	3	0	2	1	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0005	2352	2	0	2	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0006	2352	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0007	2352	1	0	0	0	1	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0008	2352	1	0	0	1	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0009	2352	1	0	0	1	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0010	2352	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0011	2352	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	c0012	2352	1	0	0	1	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP3_chr1_190092658_190482864	1/1	c0001	2301	237	78	36	85	6	30	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	c0002	2301	1	1	0	0	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	c0003	2301	1	0	0	1	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	c0004	2301	1	1	0	0	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRIP1_chr17_61674139_61868528	0/1	c0001	3750	153	38	30	62	5	17	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	1/0	c0002	3750	52	7	7	24	0	13	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0003	3750	47	19	6	11	3	8	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0004	3750	2	0	0	2	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0005	3750	2	1	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0006	3750	2	0	0	2	0	0	copy fasta	BRIP1	chr17	61674139	61868528