JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFYVE28_chr4_2264597_2423645	0/0	c0004	2664	32	12	10	6	1	3	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0005	2664	25	6	2	6	5	6	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	1/0	c0006	2664	15	2	0	8	1	3	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0007	2664	9	2	4	2	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0008	2664	8	3	4	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0009	2664	6	3	2	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0010	2664	3	1	1	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/1	c0011	2664	3	1	1	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0012	2664	3	0	0	3	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0013	2664	3	3	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0014	2664	2	1	0	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0015	2664	2	0	1	0	1	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0016	2664	2	2	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0017	2664	2	0	2	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0018	2664	2	0	2	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0019	2664	2	0	1	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0020	2664	2	0	1	0	1	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0021	2664	2	0	0	2	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0022	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0023	2664	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0024	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0025	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0026	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0027	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0028	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0029	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0030	2664	1	0	0	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0031	2664	1	0	0	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0032	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0033	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0034	2664	1	0	0	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0035	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0036	2664	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0037	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0038	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0039	2664	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0040	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0041	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0042	2664	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0043	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0044	2664	1	0	1	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0045	2664	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	c0046	2664	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE9_chr1_52137089_52351634	1/1	c0001	4278	160	72	23	49	3	11	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0002	4278	12	2	2	2	1	5	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0003	4278	8	0	0	7	0	1	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0004	4278	6	0	0	6	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0005	4278	3	3	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0006	4278	2	2	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0007	4278	2	2	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634