JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZGPAT_chr20_63703039_63741142	0/0	c0008	1536	1	1	0	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	c0009	1536	1	0	0	1	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	c0010	1536	1	0	0	1	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGRF1_chr4_112534339_112641909	1/1	c0001	6315	150	34	22	63	9	20	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0002	6315	110	22	19	52	7	10	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0003	6315	18	0	0	18	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0004	6315	14	2	4	5	0	3	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0005	6315	11	1	2	8	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0006	6315	10	0	0	10	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0007	6315	10	0	7	0	2	1	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0008	6315	7	7	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0009	6315	6	0	0	6	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0010	6315	5	0	0	5	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0011	6315	4	3	1	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0012	6315	4	0	0	4	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0013	6315	3	0	0	3	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0014	6315	3	3	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0015	6315	3	0	0	3	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0016	6315	2	2	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0017	6315	2	0	0	0	0	2	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0018	6315	2	0	0	2	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0019	6315	2	2	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0020	6315	2	0	2	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0021	6315	2	0	1	0	0	1	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0022	6315	2	2	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0023	6315	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0024	6315	1	0	1	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0025	6315	1	0	0	0	0	1	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0026	6315	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0027	6315	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0028	6315	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0029	6315	1	0	1	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0030	6315	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0031	6315	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0032	6315	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0033	6315	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0034	6315	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0035	6315	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0036	6315	1	0	1	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0037	6315	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0038	6315	1	0	1	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0039	6315	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	c0040	6315	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZHX1_chr8_123243456_123279286	1/1	c0001	2622	257	78	49	90	4	34	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	c0002	2622	4	3	1	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	c0003	2622	3	0	3	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	c0004	2622	2	2	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	c0005	2622	1	1	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	c0006	2622	1	0	0	1	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	c0007	2622	1	0	1	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286