JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZHX1_chr8_123243456_123279286	0/0	c0008	2622	1	0	0	1	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX2_chr8_122776655_122979510	0/0	c0001	2514	87	37	9	35	4	2	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0002	2514	69	30	13	16	3	7	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0003	2514	42	0	4	33	0	5	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0004	2514	41	0	13	8	6	14	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0005	2514	11	10	1	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0006	2514	9	4	4	0	0	1	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0007	2514	5	5	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0008	2514	5	1	3	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0009	2514	3	3	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0010	2514	2	2	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0011	2514	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0012	2514	1	0	1	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0013	2499	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0014	2514	1	0	0	0	1	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0015	2514	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0016	2514	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0017	2514	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0018	2514	1	0	0	0	0	1	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0019	2514	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	c0020	2514	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX3_chr20_41173455_41322731	1/0	c0001	2871	324	65	52	170	9	27	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	c0002	2871	12	0	6	1	3	2	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	c0003	2871	6	5	1	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	c0004	2871	5	5	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	c0005	2871	4	3	1	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/1	c0006	2871	3	0	0	0	0	2	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	c0007	2871	2	2	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	c0008	2871	1	0	0	0	0	1	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	c0009	2871	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	c0010	2871	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	c0011	2871	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZIC1_chr3_147404365_147421719	1/1	c0001	1344	352	78	64	162	13	33	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	c0002	1344	2	0	2	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	c0003	1344	2	1	1	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	c0004	1344	1	0	1	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	c0005	1344	1	1	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	c0006	1344	1	0	0	0	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	c0007	1344	1	0	0	0	1	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC2_chr13_99976784_99991765	1/0	c0001	1599	397	81	68	186	18	43	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	c0002	1602	20	3	3	11	0	3	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/1	c0003	1599	7	0	6	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	c0004	1602	5	4	1	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	c0005	1599	5	0	0	5	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	c0006	1599	4	3	1	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	c0007	1599	2	1	1	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	c0008	1599	2	2	0	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	c0009	1599	1	1	0	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	c0010	1599	1	1	0	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC3_chrX_137561127_137577102	1/1	c0001	1404	289	62	60	124	9	32	copy fasta	ZIC3	chrX	137561127	137577102