JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZIC3_chrX_137561127_137577102	0/0	c0002	1404	3	3	0	0	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0003	1404	2	0	0	0	0	2	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0004	1404	2	2	0	0	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0005	1410	1	0	0	0	1	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0006	1404	1	1	0	0	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0007	1404	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0008	1404	1	1	0	0	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0009	1405	1	0	0	0	1	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0010	1404	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0011	1404	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0012	1404	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0013	1404	1	1	0	0	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	c0014	1404	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC4_chr3_147381046_147411543	1/1	c0001	3076	194	47	44	75	9	17	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0002	3076	72	5	11	50	0	6	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0003	3076	61	20	5	25	3	8	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0004	3076	8	0	4	0	2	2	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0005	3076	8	0	3	5	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0006	3076	3	0	2	0	1	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0007	3076	2	0	0	0	2	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0008	3076	2	2	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0009	3076	2	2	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0010	3118	1	0	0	0	1	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0011	3076	1	0	1	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0012	3076	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0013	3076	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0014	3076	1	0	0	0	0	1	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0015	3076	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0016	3076	1	0	1	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0017	3076	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0018	3076	1	0	0	0	0	1	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0019	3076	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0020	3076	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0021	3076	1	0	0	0	0	1	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0022	3076	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0023	3076	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0024	3076	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	c0025	3076	1	0	1	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC5_chr13_99957964_99976767	1/1	c0001	1920	173	18	37	86	11	19	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0002	1917	98	39	14	30	4	11	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0003	1921	34	0	8	17	1	8	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0004	1918	17	11	4	2	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0005	1920	14	0	0	14	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0006	1917	9	9	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0007	1911	8	0	0	8	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0008	1923	6	2	0	3	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0009	1926	5	0	1	4	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0010	1917	5	4	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0011	1920	5	5	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0012	1921	4	0	0	3	0	1	copy fasta	ZIC5	chr13	99957964	99976767