JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZIC5_chr13_99957964_99976767	0/0	c0013	1926	3	0	0	3	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0014	1917	3	3	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0015	1920	2	0	0	2	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0016	1905	2	0	0	1	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0017	1917	2	1	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0018	1917	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0019	1920	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0020	1924	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0021	1921	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0022	1875	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0023	1921	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0024	1920	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0025	1921	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0026	1900	1	0	0	0	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0027	1921	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0028	1927	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0029	1918	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0030	1920	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0031	1920	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0032	1902	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0033	1920	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0034	1920	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0035	1920	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0036	1917	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	c0037	1921	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIK1_chr19_57579145_57598890	1/1	c0001	1464	425	88	77	202	12	44	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0002	1464	2	2	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0003	1464	2	2	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0004	1464	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0005	1464	1	0	0	0	0	1	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0006	1464	1	0	1	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0007	1464	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0008	1464	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0009	1464	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0010	1464	1	0	0	0	0	1	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0011	1464	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0012	1464	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0013	1464	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	c0014	1464	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIM2_chr19_56769547_56845726	0/0	c0001	1677	174	42	40	62	9	21	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/1	c0002	1677	76	5	19	34	5	12	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	1/0	c0003	1677	67	25	11	23	1	6	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0004	1677	22	0	0	22	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0005	1677	4	4	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0006	1677	3	3	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0007	1677	3	3	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0008	1677	2	2	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0009	1677	2	0	2	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0010	1677	2	0	0	2	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0011	1677	2	0	0	2	0	0	copy fasta	ZIM2	chr19	56769547	56845726