JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZIM2_chr19_56769547_56845726	0/0	c0012	1677	1	0	0	0	1	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0013	1677	1	1	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0014	1677	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0015	1677	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0016	1677	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0017	1677	1	1	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0018	1677	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0019	1677	1	0	1	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0020	1677	1	0	0	0	0	1	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0021	1677	1	0	0	0	0	1	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0022	1677	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0023	1677	1	0	0	0	0	1	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	c0024	1677	1	0	1	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM3_chr19_57129096_57150202	0/0	c0001	1419	86	6	10	69	0	1	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0002	1419	78	16	22	13	5	22	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	1/1	c0003	1419	76	23	18	16	5	12	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0004	1419	72	1	15	48	4	4	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0005	1419	40	1	5	30	1	3	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0006	1419	12	11	1	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0007	1419	8	6	2	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0008	1419	8	8	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0009	1419	7	7	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0010	1419	5	5	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0011	1419	4	0	0	4	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0012	1419	3	0	3	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0013	1419	2	0	0	2	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0014	1419	2	0	0	0	0	2	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0015	1419	2	0	0	1	1	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0016	1419	2	2	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0017	1419	2	2	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0018	1419	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0019	1419	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0020	1419	1	0	1	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0021	1419	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0022	1419	1	0	0	1	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0023	1419	1	0	1	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0024	1419	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0025	1419	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	c0026	1419	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZKSCAN1_chr7_100010596_100046689	1/1	c0001	1692	394	92	72	165	16	47	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	c0002	1692	2	0	0	0	2	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	c0003	1692	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	c0004	1692	1	0	0	0	0	1	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN2_chr16_25231001_25262845	1/1	c0001	2904	169	36	34	71	6	20	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0002	2904	77	13	9	46	2	7	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0003	2904	45	2	6	30	2	5	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0004	2904	39	18	9	10	0	2	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0005	2904	10	3	6	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0006	2904	8	7	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0007	2904	7	5	2	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845