JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZKSCAN2_chr16_25231001_25262845	0/0	c0008	2904	4	4	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0009	2904	3	3	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0010	2904	3	0	0	0	0	3	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0011	2904	2	2	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0012	2904	2	0	0	2	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0013	2904	2	0	0	2	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0014	2904	2	0	2	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0015	2904	2	0	1	0	1	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0016	2904	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0017	2904	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0018	2904	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0019	2904	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0020	2904	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0021	2904	1	0	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0022	2904	1	0	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0023	2904	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0024	2904	1	0	0	0	1	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0025	2904	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0026	2904	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0027	2904	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0028	2904	1	0	0	0	0	1	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0029	2904	1	0	0	0	0	1	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	c0030	2904	1	0	0	0	0	1	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN3_chr6_28344947_28374172	1/0	c0001	1617	160	18	28	84	8	21	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/1	c0002	1617	68	31	14	10	5	7	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0003	1617	55	3	9	41	0	2	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0004	1617	51	15	7	28	0	1	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0005	1617	50	6	11	27	1	5	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0006	1617	19	16	1	0	0	2	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0007	1617	5	5	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0008	1617	2	2	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0009	1617	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0010	1617	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0011	1617	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	c0012	1617	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN4_chr6_28236697_28257269	1/1	c0001	1638	267	47	50	123	13	32	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0002	1638	62	16	13	29	1	3	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0003	1638	56	6	5	45	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0004	1638	16	15	1	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0005	1638	5	0	0	5	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0006	1638	5	2	3	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0007	1638	3	3	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0008	1638	2	2	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0009	1638	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0010	1638	1	0	0	0	0	1	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0011	1638	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	c0012	1638	1	1	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN5_chr7_99499662_99539700	1/1	c0001	2520	289	76	41	119	12	39	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	c0002	2520	5	5	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	c0003	2520	5	4	1	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700