JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZKSCAN5_chr7_99499662_99539700	0/0	c0004	2520	3	3	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	c0005	2520	3	3	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	c0006	2520	2	0	2	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	c0007	2520	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	c0008	2520	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	c0009	2520	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	c0010	2520	1	0	0	0	0	1	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	c0011	2520	1	1	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN7_chr3_44550193_44577158	0/0	c0001	2265	147	16	34	63	7	27	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	1/0	c0002	2265	85	32	13	26	5	8	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0003	2265	50	27	16	0	3	4	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0004	2265	18	15	2	0	1	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0005	2265	4	0	0	4	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0006	2265	3	3	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0007	2265	2	0	0	2	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0008	2265	1	0	0	1	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0009	2265	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0010	2265	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0011	2265	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0012	2265	1	0	1	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0013	2265	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0014	2265	1	0	0	1	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/1	c0015	2265	1	0	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0016	2265	1	0	0	1	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0017	2265	1	0	0	0	0	1	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	c0018	2265	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN8_chr6_28136883_28164460	1/0	c0001	1737	285	56	43	142	12	31	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0002	1737	105	32	23	42	1	7	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/1	c0003	1737	7	1	0	3	1	1	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0004	1737	2	0	0	0	0	2	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0005	1737	2	0	0	0	0	2	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0006	1737	2	2	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0007	1737	1	0	1	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0008	1737	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0009	1737	1	0	0	1	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0010	1737	1	0	1	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0011	1737	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0012	1737	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	c0013	1737	1	0	0	0	0	1	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZMAT1_chrX_101877290_101937027	1/1	c0001	2088	212	57	41	81	10	21	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0002	2088	26	13	0	11	1	1	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0003	2091	2	1	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0004	2088	2	0	0	2	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0005	2088	1	0	1	0	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0006	2088	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0007	2088	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0008	2089	1	0	0	0	0	1	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0009	2089	1	0	1	0	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0010	2090	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	c0011	2091	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027