JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZMAT1_chrX_101877290_101937027	0/0	c0012	2088	1	0	0	0	0	1	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT2_chr5_140695447_140711686	1/1	c0001	600	378	96	62	168	14	36	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	c0002	600	1	0	0	0	1	0	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	c0003	600	1	0	0	0	1	0	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT3_chr3_179012223_179076809	1/1	c0001	870	348	87	74	132	12	41	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	c0002	870	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	c0003	870	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT4_chr8_40525590_40902826	1/1	c0001	690	200	63	35	64	5	31	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	c0002	690	23	8	9	0	1	5	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	c0003	690	5	5	0	0	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT5_chr22_29725956_29772007	1/1	c0001	513	389	90	78	164	15	40	copy fasta	ZMAT5	chr22	29725956	29772007
ZMAT5_chr22_29725956_29772007	0/0	c0002	513	1	1	0	0	0	0	copy fasta	ZMAT5	chr22	29725956	29772007
ZMAT5_chr22_29725956_29772007	0/0	c0003	513	1	1	0	0	0	0	copy fasta	ZMAT5	chr22	29725956	29772007
ZMAT5_chr22_29725956_29772007	0/0	c0004	513	1	0	0	0	1	0	copy fasta	ZMAT5	chr22	29725956	29772007
ZMIZ1_chr10_79063966_79321519	1/1	c0001	3204	257	61	57	94	12	31	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0002	3204	8	5	0	0	0	3	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0003	3204	5	0	0	5	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0004	3204	4	0	0	4	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0005	3204	2	1	1	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0006	3204	1	0	0	1	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0007	3204	1	0	1	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0008	3204	1	0	0	1	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0009	3204	1	0	0	1	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0010	3204	1	0	1	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0011	3204	1	0	1	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0012	3204	1	0	0	1	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0013	3204	1	0	1	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0014	3204	1	1	0	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0015	3204	1	0	0	1	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0016	3204	1	1	0	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	c0017	3204	1	1	0	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ2_chr7_44743847_44774881	1/1	c0001	2763	282	74	55	109	9	33	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0002	2763	51	1	13	26	4	7	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0003	2763	7	0	6	0	1	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0004	2763	7	0	2	5	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0005	2763	4	4	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0006	2763	4	3	1	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0007	2763	3	0	3	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0008	2763	2	0	2	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0009	2763	2	2	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0010	2763	2	0	0	0	2	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0011	2763	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0012	2763	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0013	2763	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0014	2763	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0015	2763	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	c0016	2763	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMPSTE24_chr1_40253236_40299180	1/1	c0001	1428	314	83	38	143	14	34	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	c0002	1428	70	7	12	35	2	14	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	c0003	1428	4	4	0	0	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180