JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRIP1_chr17_61674139_61868528	0/0	c0007	3750	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0008	3750	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0009	3750	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0010	3750	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0011	3750	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0012	3750	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0013	3750	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	c0014	3750	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIX1_chr5_34910711_34930996	1/1	c0001	1062	419	93	78	190	17	39	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	c0002	1062	16	0	4	6	1	5	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	c0003	1062	2	0	0	2	0	0	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	c0004	1062	1	0	0	1	0	0	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	c0005	1062	1	1	0	0	0	0	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	c0006	1062	1	0	0	1	0	0	copy fasta	BRIX1	chr5	34910711	34930996
BRK1_chr3_10110675_10132190	1/1	c0001	228	355	94	72	131	14	42	copy fasta	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	c0002	228	1	0	0	1	0	0	copy fasta	BRK1	chr3	10110675	10132190
BRME1_chr19_13877348_13911117	0/0	c0001	2007	163	18	31	76	10	28	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0002	2007	109	35	12	49	4	9	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0003	2007	11	11	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0004	2007	6	0	3	0	3	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0005	2007	6	6	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0006	2007	4	4	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0007	2007	3	3	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0008	2007	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0009	2007	2	0	1	0	0	1	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0010	2007	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0011	2007	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0012	2007	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0013	2007	1	0	0	0	0	1	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0014	2007	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0015	2007	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0016	2007	1	1	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0017	2007	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0018	2007	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0019	2007	1	0	0	0	0	1	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0020	2007	1	0	1	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0021	2007	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	c0022	2007	1	0	0	0	1	0	copy fasta	BRME1	chr19	13877348	13911117
BRMS1L_chr14_35821338_35876963	1/1	c0001	972	373	92	46	177	8	48	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	c0002	972	1	0	0	1	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1_chr11_66332339_66350104	0/0	c0001	741	362	73	56	192	9	32	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/1	c0002	741	44	2	16	6	9	10	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	1/0	c0003	741	8	7	0	0	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	c0004	741	8	8	0	0	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	c0005	741	1	1	0	0	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	c0006	741	1	1	0	0	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BROX_chr1_222707564_222740187	1/1	c0001	1236	356	89	60	151	13	41	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	c0002	1236	18	0	0	17	1	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	c0003	1236	5	5	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	c0004	1236	3	0	0	1	0	2	copy fasta	BROX	chr1	222707564	222740187