JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZMPSTE24_chr1_40253236_40299180	0/0	c0004	1428	3	0	0	3	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	c0005	1428	1	1	0	0	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	c0006	1428	1	0	0	1	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	c0007	1428	1	1	0	0	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMYM1_chr1_35074385_35120859	0/0	c0001	3429	228	33	33	129	6	27	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	1/1	c0002	3429	98	27	17	46	1	5	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0003	3426	14	13	1	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0004	3429	8	6	2	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0005	3429	8	5	3	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0006	3429	3	3	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0007	3429	2	2	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0008	3429	2	2	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0009	3429	2	0	0	0	2	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0010	3429	1	1	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0011	3429	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0012	3429	1	1	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0013	3426	1	1	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0014	3429	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0015	3429	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0016	3429	1	0	0	0	1	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0017	3429	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	c0018	3429	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM2_chr13_19953727_20094115	1/1	c0001	4134	234	53	38	106	11	24	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0002	4134	28	10	6	1	3	8	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0003	4134	7	7	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0004	4134	5	4	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0005	4134	2	1	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0006	4134	2	2	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0007	4134	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0008	4134	1	0	0	0	0	1	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0009	4134	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0010	4134	1	0	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0011	4134	1	0	0	0	0	1	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0012	4134	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0013	4134	1	0	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	c0014	4134	1	0	0	1	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM3_chrX_71234624_71259140	1/1	c0001	4113	259	63	49	107	13	25	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0002	4113	15	1	10	4	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0003	4113	4	4	0	0	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0004	4113	4	0	1	3	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0005	4113	2	0	0	0	0	2	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0006	4113	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0007	4112	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0008	4112	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0009	4113	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0010	4113	1	1	0	0	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0011	4115	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0012	4112	1	0	1	0	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0013	4113	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0014	4113	1	0	0	0	0	1	copy fasta	ZMYM3	chrX	71234624	71259140