JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZMYM3_chrX_71234624_71259140	0/0	c0015	4113	1	0	0	0	0	1	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0016	4113	1	1	0	0	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0017	4113	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0018	4114	1	0	0	0	0	1	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0019	4114	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0020	4114	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	c0021	4109	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM4_chr1_35263709_35427058	1/1	c0001	4647	207	36	35	116	4	14	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	c0002	4647	69	42	5	15	2	5	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	c0003	4647	7	6	1	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	c0004	4647	7	7	0	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	c0005	4647	3	0	2	0	0	1	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	c0006	4647	1	0	0	1	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	c0007	4647	1	1	0	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	c0008	4647	1	0	0	0	0	1	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	c0009	4647	1	0	1	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	c0010	4647	1	0	0	0	0	1	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM5_chr13_19818482_19868649	0/0	c0001	2010	169	31	47	60	10	21	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	1/1	c0002	2010	68	41	15	1	3	6	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0003	2010	41	18	4	14	2	3	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0004	2010	3	0	0	2	0	1	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0005	2010	1	0	0	1	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0006	2010	1	0	0	1	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0007	2010	1	0	1	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0008	2010	1	0	1	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0009	2010	1	1	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0010	2010	1	0	0	1	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0011	2010	1	1	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0012	2010	1	0	1	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0013	2010	1	0	1	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0014	2010	1	0	0	1	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0015	2010	1	0	0	0	0	1	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0016	2010	1	0	0	1	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0017	2010	1	1	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0018	2010	1	1	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	c0019	2010	1	0	0	0	1	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM6_chr1_34981165_35036945	1/1	c0001	3978	261	63	29	140	6	21	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0002	3978	21	19	2	0	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0003	3978	16	15	1	0	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0004	3978	2	0	0	0	0	2	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0005	3978	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0006	3978	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0007	3978	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0008	3978	1	1	0	0	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0009	3978	1	1	0	0	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0010	3978	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0011	3978	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0012	3978	1	1	0	0	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0013	3978	1	0	0	0	0	1	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	c0014	3978	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945