JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZMYND10_chr3_50336112_50350732	1/1	c0001	1323	354	83	68	152	14	35	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	c0002	1323	3	3	0	0	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	c0003	1323	2	0	0	2	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	c0004	1323	2	2	0	0	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	c0005	1323	1	0	0	0	0	1	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND11_chr10_130455_259637	0/1	c0001	1809	304	70	51	134	14	34	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	1/0	c0002	1809	37	12	11	11	0	2	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	c0003	1809	1	0	0	1	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND12_chr1_42425329_42461022	1/1	c0001	1098	136	26	28	66	3	11	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0002	1098	113	30	31	26	7	19	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0003	1098	109	8	12	71	2	16	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0004	1098	23	21	2	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0005	1098	2	0	0	2	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0006	1098	1	1	0	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0007	1098	1	1	0	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0008	1098	1	0	1	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0009	1098	1	0	0	1	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0010	1098	1	1	0	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0011	1098	1	1	0	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	c0012	1098	1	1	0	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND15_chr17_4734833_4751113	1/1	c0001	2229	331	81	55	155	8	30	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0002	2229	90	1	23	40	8	18	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0003	2229	9	4	2	3	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0004	2229	7	7	0	0	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0005	2229	5	0	0	5	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0006	2229	2	0	0	0	0	2	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0007	2229	2	2	0	0	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0008	2229	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0009	2229	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0010	2229	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0011	2229	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0012	2229	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0013	2229	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0014	2229	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0015	2229	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0016	2229	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0017	2229	1	1	0	0	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0018	2229	1	1	0	0	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	c0019	2229	1	1	0	0	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND19_chr9_137577081_137595512	1/1	c0001	684	321	94	66	103	16	40	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	c0002	684	4	0	4	0	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	c0003	684	1	1	0	0	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	c0004	684	1	0	0	1	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	c0005	684	1	1	0	0	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND8_chr20_47204214_47361699	1/1	c0001	3705	84	18	19	30	6	9	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0002	3705	76	47	12	11	0	6	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0003	3705	23	3	9	4	2	5	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0004	3705	8	7	1	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0005	3705	5	5	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0006	3705	2	0	1	1	0	0	copy fasta	ZMYND8	chr20	47204214	47361699