JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZMYND8_chr20_47204214_47361699	0/0	c0007	3705	2	0	0	2	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0008	3705	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0009	3705	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0010	3705	1	0	1	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0011	3705	1	0	1	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0012	3705	1	0	0	1	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0013	3705	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0014	3705	1	0	0	1	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	c0015	3705	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZNF100_chr19_21717771_21772579	0/1	c0001	1629	137	33	25	62	4	12	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0002	1629	129	32	22	62	5	8	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0003	1629	28	0	0	24	0	4	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0004	1629	23	0	5	9	2	7	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0005	1629	14	13	0	0	1	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0006	1629	6	0	5	0	0	1	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0007	1629	6	5	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0008	1629	5	4	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0009	1629	3	0	0	3	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0010	1629	2	0	2	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0011	1629	1	0	0	0	1	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0012	1629	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0013	1125	1	0	0	0	1	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0014	1629	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0015	1629	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0016	1629	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0017	1629	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0018	1629	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0019	1629	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0020	1629	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0021	1629	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	c0022	1629	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF101_chr19_19663839_19688506	1/1	c0001	1311	325	93	55	116	12	47	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	c0002	1311	32	0	8	21	0	3	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	c0003	1311	3	0	0	1	2	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	c0004	1311	1	1	0	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	c0005	1311	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	c0006	1311	1	0	1	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	c0007	1311	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF106_chr15_42407823_42496141	1/1	c0001	5721	101	20	23	43	2	11	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0002	5721	47	16	13	13	0	5	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0003	5721	33	14	0	19	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0004	5721	16	0	8	0	2	6	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0005	5721	7	7	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0006	5721	4	1	2	0	1	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0007	5721	4	4	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0008	5721	4	4	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0009	5721	4	4	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0010	5721	4	4	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0011	5721	4	4	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0012	5721	3	3	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141