JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF106_chr15_42407823_42496141	0/0	c0013	5721	3	0	3	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0014	5721	2	0	1	0	0	1	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0015	5721	2	2	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0016	5721	2	1	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0017	5721	2	1	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0018	5721	2	0	0	0	0	2	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0019	5721	2	2	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0020	5721	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0021	5721	1	0	0	1	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0022	5721	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0023	5721	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0024	5721	1	0	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0025	5721	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0026	5721	1	0	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0027	5721	1	0	0	1	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0028	5721	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0029	5721	1	0	0	0	0	1	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0030	5721	1	0	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0031	5721	1	0	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0032	5721	1	0	0	0	1	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0033	5721	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0034	5721	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0035	5721	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0036	5721	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	c0037	5721	1	0	0	1	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF107_chr7_64661133_64716577	0/1	c0001	2559	183	18	29	113	7	15	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0002	2559	107	17	28	45	4	13	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	1/0	c0003	2559	38	7	4	22	0	4	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0004	2562	24	7	1	16	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0005	2559	17	15	2	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0006	2562	14	13	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0007	2562	14	13	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0008	2559	8	0	5	0	1	2	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0009	2559	4	4	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0010	2559	3	0	0	3	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0011	2559	2	0	0	2	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0012	2559	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0013	2559	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0014	2559	1	0	0	1	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0015	2562	1	0	0	1	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0016	2139	1	0	0	1	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0017	2559	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0018	2559	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	c0019	2559	1	0	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF10_chr12_133125627_133164465	1/1	c0001	1722	211	48	38	83	11	29	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	c0002	1722	80	25	26	18	1	10	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	c0003	1722	23	20	2	0	0	1	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	c0004	1722	13	0	2	11	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	c0005	1722	1	1	0	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF112_chr19_44321555_44361680	0/0	c0001	2724	155	2	33	89	8	23	copy fasta	ZNF112	chr19	44321555	44361680