JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF112_chr19_44321555_44361680	1/0	c0002	2724	108	21	18	52	2	14	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/1	c0003	2724	106	33	25	43	2	2	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0004	2724	19	16	0	1	2	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0005	2724	8	8	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0006	2724	3	0	1	0	2	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0007	2724	2	2	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0008	2724	2	2	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0009	2724	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0010	2724	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0011	2724	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0012	2724	1	0	0	0	0	1	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0013	2724	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0014	2724	1	0	1	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	c0015	2737	1	0	0	1	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF114_chr19_48265081_48292608	1/1	c0001	1254	403	77	76	191	10	47	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0002	1254	10	10	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0003	1254	6	6	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0004	1254	4	4	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0005	1254	1	1	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0006	1254	1	0	0	1	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0007	1254	1	0	1	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0008	1254	1	0	0	0	0	1	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0009	1254	1	0	1	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0010	1254	1	0	0	0	0	1	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	c0011	1254	1	0	0	0	0	1	copy fasta	ZNF114	chr19	48265081	48292608
ZNF117_chr7_64966772_64996036	0/1	c0001	1452	205	26	51	96	8	23	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0002	1452	166	39	15	83	10	19	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	1/0	c0003	1452	52	17	5	29	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0004	1536	7	5	2	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0005	1452	4	3	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0006	1452	2	2	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0007	1452	2	0	0	2	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0008	1452	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0009	1452	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0010	1452	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0011	1452	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0012	1452	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	c0013	1452	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF121_chr19_9555329_9589504	1/1	c0001	1173	356	93	64	147	12	38	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	c0002	1173	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	c0003	1173	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF124_chr1_247149989_247177020	1/1	c0001	1056	349	59	61	170	14	43	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	c0002	1056	43	22	17	0	1	3	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	c0003	1056	3	3	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	c0004	1056	1	0	0	1	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	c0005	1056	1	0	0	1	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	c0006	1056	1	0	0	0	1	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF12_chr7_6683433_6711947	1/1	c0001	2094	353	77	65	155	12	42	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0002	2094	15	13	2	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0003	2094	4	0	4	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947