JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF12_chr7_6683433_6711947	0/0	c0004	2094	3	2	1	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0005	2094	2	2	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0006	2094	1	0	1	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0007	2094	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0008	2094	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0009	2094	1	0	1	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0010	2094	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0011	2094	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0012	2094	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0013	2094	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	c0014	2094	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF131_chr5_43115914_43181322	1/0	c0001	1872	268	72	48	100	10	37	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0002	1872	40	0	5	26	3	6	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/1	c0003	1872	8	0	1	0	1	5	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0004	1872	7	7	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0005	1872	3	0	0	3	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0006	1872	3	0	0	3	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0007	1872	2	2	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0008	1872	1	0	0	1	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0009	1872	1	0	1	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0010	1872	1	0	0	1	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0011	1872	1	1	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	c0012	1872	1	0	1	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF132_chr19_58427814_58445153	0/0	c0001	2121	211	19	41	123	7	21	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/1	c0002	2121	132	54	19	42	6	10	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	c0003	2121	42	9	13	9	2	9	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	1/0	c0004	2121	22	0	4	12	3	2	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	c0005	2121	5	0	0	5	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	c0006	2121	3	3	0	0	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	c0007	2121	3	3	0	0	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	c0008	2121	2	1	1	0	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	c0009	2121	1	0	0	1	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	c0010	2121	1	0	0	1	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	c0011	2121	1	0	0	1	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	c0012	2121	1	1	0	0	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF133_chr20_18283527_18321996	0/1	c0001	1965	280	67	51	119	11	31	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0002	1965	52	11	6	29	3	3	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0003	1965	20	5	4	5	0	6	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0004	1965	10	9	1	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0005	1965	2	2	0	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0006	1965	1	1	0	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0007	1965	1	1	0	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0008	1965	1	1	0	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0009	1965	1	1	0	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	1/0	c0010	1965	1	0	0	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0011	1965	1	0	0	1	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0012	1965	1	0	0	1	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	c0013	1965	1	0	0	1	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF134_chr19_57609242_57629724	1/1	c0001	1284	324	71	56	143	13	39	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0002	1284	47	11	3	28	1	4	copy fasta	ZNF134	chr19	57609242	57629724