JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF134_chr19_57609242_57629724	0/0	c0003	1284	35	0	6	25	2	2	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0004	1284	7	7	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0005	1284	3	3	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0006	1284	2	0	0	2	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0007	1284	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0008	1284	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0009	1284	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0010	1312	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0011	1284	1	0	1	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	c0012	1284	1	0	0	0	0	1	copy fasta	ZNF134	chr19	57609242	57629724
ZNF135_chr19_58054282_58074755	0/1	c0001	1977	164	31	42	68	10	12	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0002	1977	99	15	17	55	3	9	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	1/0	c0003	1977	91	4	11	67	0	8	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0004	1977	39	25	7	5	0	2	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0005	1977	6	6	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0006	1977	4	0	0	4	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0007	1977	3	0	0	0	0	3	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0008	1977	2	2	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0009	1977	2	2	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0010	1977	2	2	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0011	1977	2	0	0	2	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0012	1977	1	0	0	0	1	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0013	1977	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0014	1977	1	0	1	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0015	1977	1	0	0	0	0	1	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0016	1977	1	0	0	1	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0017	1977	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0018	1977	1	0	1	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0019	1977	1	0	1	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0020	1977	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0021	1977	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0022	1977	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0023	1977	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0024	1977	1	0	0	0	0	1	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0025	1977	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0026	1977	1	0	0	1	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0027	1977	1	0	0	0	0	1	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0028	1977	1	0	0	1	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0029	1977	1	0	0	0	0	1	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0030	1977	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	c0031	1977	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF136_chr19_12158096_12194871	1/1	c0001	1623	359	86	61	150	16	44	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	c0002	1623	4	3	1	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	c0003	1623	1	1	0	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	c0004	1623	1	1	0	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	c0005	1623	1	1	0	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF138_chr7_64789428_64838680	0/0	c0001	960	206	74	30	70	11	21	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/1	c0002	960	164	16	31	92	7	17	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	c0003	960	53	1	13	38	0	1	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	1/0	c0004	960	6	5	0	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680