JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF138_chr7_64789428_64838680	0/0	c0005	960	1	0	0	0	0	1	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	c0006	960	1	0	1	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	c0007	960	1	0	1	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF140_chr12_133075923_133112428	0/0	c0001	1374	180	73	36	39	8	24	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	1/1	c0002	1374	142	17	34	55	10	24	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	c0003	1374	54	1	2	51	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	c0004	1374	14	0	10	4	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	c0005	1374	1	0	0	1	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	c0006	1374	1	1	0	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF141_chr4_332814_389868	1/1	c0001	1425	311	79	48	130	16	36	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0002	1425	14	14	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0003	1425	2	2	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0004	1425	2	2	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0005	1425	2	1	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0006	1425	2	0	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0007	1425	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0008	1425	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0009	1447	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0010	1425	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	c0011	1425	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF142_chr2_218628329_218664623	0/1	c0001	5664	114	5	33	59	6	10	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0002	5664	48	12	1	32	0	3	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0003	5664	42	2	11	17	3	9	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0004	5664	24	24	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	1/0	c0005	5664	19	17	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0006	5664	19	0	11	0	4	4	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0007	5664	13	12	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0008	5664	9	9	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0009	5664	7	0	0	7	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0010	5664	5	5	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0011	5664	3	3	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0012	5664	3	0	0	3	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0013	5664	2	2	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0014	5664	2	2	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0015	5664	1	0	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0016	5664	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0017	5664	1	0	0	1	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0018	5664	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0019	5664	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0020	5664	1	0	0	1	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0021	5664	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0022	5664	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0023	5664	1	0	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0024	5664	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0025	5664	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0026	5664	1	0	0	1	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0027	5664	1	0	0	0	1	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0028	5664	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0029	5664	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	c0030	5664	1	0	0	1	0	0	copy fasta	ZNF142	chr2	218628329	218664623