JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF143_chr11_9456012_9533524	0/1	c0001	1917	252	71	56	88	8	28	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	1/0	c0002	1917	57	0	9	38	1	8	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	c0003	1917	10	0	1	0	3	6	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	c0004	1917	5	5	0	0	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	c0005	1917	2	0	2	0	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	c0006	1917	2	0	0	2	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	c0007	1917	2	2	0	0	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	c0008	1917	1	0	0	1	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	c0009	1917	1	0	0	1	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF146_chr19_36210106_36243768	1/1	c0001	879	246	59	49	104	12	20	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	c0002	879	140	32	27	58	4	19	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	c0003	879	2	0	0	0	0	2	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	c0004	879	1	1	0	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	c0005	879	1	0	0	0	0	1	copy fasta	ZNF146	chr19	36210106	36243768
ZNF148_chr3_125220669_125380325	0/1	c0001	2385	218	65	38	78	8	28	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	1/0	c0002	2385	109	16	17	60	6	9	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	c0003	2385	3	3	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	c0004	2385	1	0	1	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	c0005	2385	1	0	0	0	0	1	copy fasta	ZNF148	chr3	125220669	125380325
ZNF14_chr19_19705472_19738112	1/1	c0001	1929	276	81	55	100	10	28	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0002	1929	80	1	13	52	4	10	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0003	1929	17	0	1	14	0	2	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0004	1929	7	0	0	0	2	5	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0005	1929	6	6	0	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0006	1929	4	4	0	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0007	1929	1	1	0	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0008	1929	1	0	0	1	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0009	1929	1	0	0	1	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0010	1929	1	0	0	1	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0011	1929	1	0	0	1	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0012	1929	1	0	1	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0013	1929	1	1	0	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	c0014	1929	1	0	0	0	0	1	copy fasta	ZNF14	chr19	19705472	19738112
ZNF154_chr19_57691275_57714204	1/1	c0001	1314	195	30	37	86	8	32	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0002	1314	116	3	19	85	3	6	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0003	1314	56	33	8	12	2	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0004	1314	53	15	6	25	4	3	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0005	1314	6	0	4	0	1	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0006	1314	2	0	1	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0007	1314	2	1	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0008	1314	2	1	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0009	1314	2	2	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0010	1314	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0011	1314	1	0	0	0	0	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0012	1314	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0013	1283	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0014	1314	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0015	1314	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0016	1314	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0017	1314	1	0	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204