JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BROX_chr1_222707564_222740187	0/0	c0005	1236	2	2	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	c0006	1236	1	0	0	1	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	c0007	1236	1	0	0	0	0	1	copy fasta	BROX	chr1	222707564	222740187
BRPF1_chr3_9726735_9753015	1/1	c0001	3663	396	78	76	186	17	37	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0002	3663	6	0	1	1	0	4	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0003	3663	3	3	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0004	3663	2	0	0	1	0	1	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0005	3663	2	1	0	0	0	1	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0006	3663	2	2	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0007	3663	1	1	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0008	3663	1	0	0	0	0	1	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0009	3663	1	1	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0010	3663	1	1	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0011	3663	1	1	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0012	3663	1	0	1	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0013	3663	1	1	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0014	3663	1	1	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0015	3663	1	0	0	1	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0016	3663	1	0	0	0	0	1	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0017	3663	1	0	0	1	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0018	3663	1	0	1	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0019	3663	1	0	0	0	1	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0020	3663	1	0	0	0	0	1	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	c0021	3663	1	0	1	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF3_chr6_36191744_36237790	1/1	c0001	3618	309	77	53	146	6	25	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0002	3618	7	4	1	2	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0003	3618	6	0	1	0	2	3	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0004	3618	3	3	0	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0005	3618	2	0	2	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0006	3618	1	0	1	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0007	3618	1	0	0	1	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0008	3618	1	0	1	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0009	3618	1	0	0	0	0	1	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0010	3618	1	0	0	1	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0011	3618	1	0	0	0	0	1	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0012	3618	1	0	1	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0013	3618	1	1	0	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	c0014	3618	1	1	0	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRS3_chrX_136482947_136498780	1/1	c0001	1200	278	65	51	125	7	28	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	c0002	1200	1	0	0	1	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	c0003	1200	1	1	0	0	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRSK1_chr19_55278997_55317562	1/0	c0001	2337	259	72	58	84	8	36	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0002	2337	41	2	4	31	0	4	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/1	c0003	2337	12	7	4	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0004	2337	10	10	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0005	2337	2	1	1	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0006	2337	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0007	2337	1	0	1	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0008	2323	1	0	1	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0009	2337	1	1	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562