JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF16_chr8_144925358_144955880	0/0	c0008	2049	2	1	0	1	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0009	2049	2	0	0	2	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0010	2049	2	2	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0011	2049	2	0	0	0	0	2	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0012	2049	2	2	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0013	2049	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0014	2049	1	0	0	1	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0015	2049	1	0	1	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0016	2049	1	0	0	1	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0017	2049	1	0	1	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0018	2049	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0019	2049	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0020	2049	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0021	2049	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0022	2049	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0023	2049	1	0	0	1	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0024	2049	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0025	2049	1	0	0	0	0	1	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0026	2049	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF174_chr16_3396215_3414364	0/1	c0001	1224	326	92	65	115	18	35	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	1/0	c0002	1224	26	3	7	10	0	5	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	c0003	1224	3	3	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	c0004	1224	2	0	2	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	c0005	1224	2	0	0	0	0	2	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	c0006	1224	1	0	1	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	c0007	1224	1	0	1	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	c0008	1224	1	1	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	c0009	1224	1	1	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	c0010	1224	1	0	0	1	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF175_chr19_51566283_51597510	1/1	c0001	2136	254	44	54	114	7	33	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0002	2136	67	30	7	27	0	3	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0003	2136	26	5	10	0	5	6	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0004	2136	16	0	13	0	0	3	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0005	2136	14	0	1	13	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0006	2137	8	0	0	8	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0007	2136	8	8	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0008	2136	3	0	0	3	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0009	2136	2	2	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0010	2136	2	2	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0011	2136	2	0	0	2	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0012	2136	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0013	2136	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0014	2136	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0015	2136	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0016	2136	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0017	2136	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0018	2136	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0019	2136	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0020	2136	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0021	2136	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510