JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF175_chr19_51566283_51597510	0/0	c0022	2136	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	c0023	2136	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF177_chr19_9358013_9387617	0/1	c0001	1446	219	58	46	84	9	21	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	1/0	c0002	1446	169	27	28	93	7	13	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0003	1446	10	7	1	2	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0004	1446	3	0	0	3	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0005	1446	3	0	0	0	0	3	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0006	1446	2	1	0	0	0	1	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0007	1446	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0008	1446	1	0	1	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0009	1446	1	0	0	1	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0010	1446	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0011	1446	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0012	1446	1	0	0	1	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0013	1446	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	c0014	1446	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF17_chr19_57406161_57426934	1/1	c0001	1995	224	39	37	113	8	25	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0002	1995	82	1	16	51	2	12	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0003	1995	67	28	16	15	3	5	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0004	1995	19	17	2	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0005	1995	4	3	1	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0006	1995	1	0	0	1	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0007	1995	1	0	1	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0008	1995	1	1	0	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0009	1995	1	0	0	0	1	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0010	1995	1	1	0	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0011	1995	1	0	1	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0012	1995	1	1	0	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	c0013	1995	1	1	0	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF180_chr19_44469443_44505522	0/1	c0001	1998	229	26	43	116	9	34	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0002	1998	62	0	1	58	1	2	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	1/0	c0003	1998	43	16	15	0	6	5	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0004	1998	40	18	3	18	1	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0005	1998	22	21	1	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0006	1998	7	3	3	0	1	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0007	1998	5	1	1	3	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0008	1998	2	2	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0009	1998	2	0	0	2	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0010	1998	2	2	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0011	1998	2	0	0	2	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0012	1998	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0013	1998	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0014	1998	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0015	1998	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0016	1998	1	0	0	0	0	1	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0017	1998	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0018	1998	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0019	1998	1	0	0	0	0	1	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0020	1998	1	0	1	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0021	1998	1	0	0	0	0	1	copy fasta	ZNF180	chr19	44469443	44505522