JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF180_chr19_44469443_44505522	0/0	c0022	1998	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	c0023	1998	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF181_chr19_34729243_34750378	1/0	c0001	1716	410	83	72	203	16	35	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	c0002	1716	14	1	0	10	0	3	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	c0003	1716	5	0	4	0	1	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/1	c0004	1716	4	0	1	0	1	1	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	c0005	1716	4	0	0	4	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	c0006	1716	2	1	1	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	c0007	1716	2	2	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	c0008	1716	2	0	0	2	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	c0009	1716	2	2	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	c0010	1716	2	0	0	1	0	1	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	c0011	1716	1	1	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF182_chrX_47969851_48008989	1/1	c0001	1863	260	73	45	101	7	32	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	c0002	1863	6	0	0	6	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	c0003	1863	2	2	0	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	c0004	1863	1	0	1	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	c0005	1863	1	1	0	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF184_chr6_27445747_27478105	0/1	c0001	2256	179	49	27	79	3	20	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	1/0	c0002	2256	168	38	38	75	5	11	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	c0003	2256	39	2	7	20	2	8	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	c0004	2256	3	3	0	0	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	c0005	2256	2	0	2	0	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	c0006	2256	1	0	0	1	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	c0007	2256	1	0	0	1	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	c0008	2256	1	0	0	0	0	1	copy fasta	ZNF184	chr6	27445747	27478105
ZNF185_chrX_152893067_152978474	1/1	c0001	2169	195	42	40	83	7	21	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0002	2169	50	30	5	6	0	9	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0003	2166	2	0	0	2	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0004	2169	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0005	2169	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0006	2168	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0007	2168	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0008	2170	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0009	2168	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0010	2169	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0011	2170	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0012	2169	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0013	2171	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0014	2169	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0015	2169	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	c0016	2173	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF189_chr9_101393851_101415654	1/1	c0001	1881	399	79	67	203	11	37	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0002	1881	22	8	5	6	2	1	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0003	1881	6	0	2	0	2	2	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0004	1881	4	3	1	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0005	1881	3	0	1	0	0	2	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0006	1881	3	1	2	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0007	1881	2	0	0	0	0	2	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0008	1881	2	2	0	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654