JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF189_chr9_101393851_101415654	0/0	c0009	1881	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0010	1881	1	1	0	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0011	1881	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0012	1881	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0013	1881	1	0	0	0	1	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0014	1881	1	0	0	0	0	1	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	c0015	1881	1	0	0	0	0	1	copy fasta	ZNF189	chr9	101393851	101415654
ZNF18_chr17_11972439_12002475	1/1	c0001	1650	377	88	62	172	13	40	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0002	1650	6	6	0	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0003	1650	3	0	3	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0004	1650	2	1	1	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0005	1650	1	0	0	0	1	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0006	1650	1	1	0	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0007	1650	1	0	0	1	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0008	1650	1	0	0	1	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0009	1650	1	0	0	1	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0010	1650	1	0	1	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0011	1650	1	0	0	1	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	c0012	1650	1	0	1	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF195_chr11_3352927_3384146	1/1	c0001	1890	246	69	58	83	8	26	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	c0002	1890	107	14	5	77	0	11	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	c0003	1890	8	8	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	c0004	1890	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	c0005	1890	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	c0006	1890	1	0	0	0	0	1	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	c0007	1890	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	c0008	1890	1	0	1	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF197_chr3_44620036_44653471	1/1	c0001	3090	298	86	66	92	16	36	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	c0002	3090	7	7	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	c0003	3090	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	c0004	3090	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	c0005	3090	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	c0006	3090	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	c0007	3090	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	c0008	3090	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	c0009	3090	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF19_chr16_71468583_71494324	0/1	c0001	1377	140	45	28	50	5	11	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	1/0	c0002	1377	104	9	19	66	4	5	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	c0003	1377	102	1	14	61	4	22	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	c0004	1377	39	26	10	2	1	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	c0005	1377	12	10	1	1	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	c0006	1377	2	0	0	2	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	c0007	1377	2	0	0	2	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	c0008	1377	2	2	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	c0009	1377	1	0	0	1	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	c0010	1377	1	0	0	1	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	c0011	1377	1	1	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF200_chr16_3217325_3240158	1/1	c0001	1188	347	72	62	164	13	34	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0002	1188	23	20	3	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0003	1188	4	0	3	0	1	0	copy fasta	ZNF200	chr16	3217325	3240158