JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF200_chr16_3217325_3240158	0/0	c0004	1188	4	0	0	2	0	2	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0005	1188	2	2	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0006	1188	2	1	1	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0007	1188	1	0	0	0	0	1	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0008	1188	1	0	1	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0009	1188	1	0	0	0	0	1	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0010	1188	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0011	1188	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0012	1188	1	1	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0013	1188	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	c0014	1188	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF202_chr11_123718914_123746660	0/1	c0001	1947	250	51	54	102	11	31	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0002	1947	97	0	21	63	3	10	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	1/0	c0003	1947	57	16	2	37	0	1	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0004	1947	13	12	1	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0005	1947	2	2	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0006	1947	2	2	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0007	1947	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0008	1947	1	0	0	0	0	1	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0009	1947	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0010	1947	1	0	0	0	0	1	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0011	1947	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0012	1947	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	c0013	1947	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF205_chr16_3107586_3125517	0/0	c0001	1665	146	28	31	67	2	18	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	1/0	c0002	1665	126	17	16	82	5	5	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/1	c0003	1665	117	30	26	41	5	14	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0004	1665	20	20	0	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0005	1665	1	0	0	0	0	1	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0006	1665	1	0	1	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0007	1665	1	1	0	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0008	1665	1	0	0	1	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0009	1665	1	1	0	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0010	1665	1	0	0	1	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0011	1665	1	0	0	0	0	1	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0012	1665	1	0	0	1	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0013	1665	1	0	0	1	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0014	1665	1	1	0	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	c0015	1665	1	0	0	0	0	1	copy fasta	ZNF205	chr16	3107586	3125517
ZNF207_chr17_32345157_32386885	1/1	c0001	1485	272	94	64	62	8	42	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	c0002	1485	22	1	2	14	3	2	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	c0003	1516	1	0	0	0	1	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	c0004	1485	1	1	0	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF208_chr19_21961095_22015943	0/1	c0001	3843	98	7	21	54	11	4	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	1/0	c0002	3843	91	4	12	53	2	19	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0003	3759	79	17	12	42	1	7	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0004	3759	43	12	8	16	0	7	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0005	3843	9	7	1	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0006	3843	8	8	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0007	3843	5	5	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943