JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF208_chr19_21961095_22015943	0/0	c0008	3759	5	5	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0009	3843	5	0	0	5	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0010	3843	4	4	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0011	3843	4	0	0	4	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0012	3843	4	2	2	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0013	3927	4	4	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0014	3843	4	3	0	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0015	3759	3	3	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0016	3843	3	3	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0017	3759	2	0	0	2	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0018	3843	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0019	5019	2	0	0	2	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0020	3843	2	0	0	0	0	2	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0021	3843	2	0	2	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0022	3843	2	0	0	2	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0023	3843	2	0	2	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0024	3843	2	0	2	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0025	3846	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0026	3843	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0027	3843	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0028	3843	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0029	3843	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0030	2079	1	0	0	0	0	1	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0031	3591	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0032	3843	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0033	4431	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0034	3843	1	0	0	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0035	3843	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0036	3843	1	0	0	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0037	3843	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0038	3843	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0039	3843	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0040	3843	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0041	2751	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	c0042	3846	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF20_chr19_12126350_12145350	1/1	c0001	1599	335	75	69	132	16	41	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0002	1599	10	10	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0003	1599	6	5	1	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0004	1599	2	1	0	1	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0005	1599	2	0	0	0	0	2	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0006	1599	2	0	2	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0007	1599	2	0	1	0	0	1	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0008	1599	1	1	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0009	1599	1	1	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0010	1599	1	0	1	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0011	1599	1	1	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	c0012	1599	1	0	0	1	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF211_chr19_57628168_57649041	1/1	c0001	1734	244	61	43	96	13	29	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0002	1734	105	20	10	62	5	8	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0003	1734	6	4	1	0	0	1	copy fasta	ZNF211	chr19	57628168	57649041