JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF211_chr19_57628168_57649041	0/0	c0004	1734	3	1	2	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0005	1734	2	0	0	2	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0006	1734	2	0	0	0	0	2	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0007	1734	2	0	0	0	0	2	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0008	1734	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0009	1734	1	0	0	0	0	1	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0010	1734	1	1	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0011	1734	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0012	1734	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0013	1734	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0014	1734	1	0	0	0	0	1	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	c0015	1734	1	1	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF212_chr7_149234651_149260606	1/1	c0001	1488	357	85	65	165	11	29	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0002	1488	27	1	9	2	3	12	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0003	1488	10	0	2	6	1	1	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0004	1488	3	0	2	0	1	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0005	1488	2	2	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0006	1488	2	2	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0007	1488	1	0	1	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0008	1488	1	0	1	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0009	1488	1	1	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0010	1488	1	1	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	c0011	1488	1	0	0	1	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF213_chr16_3130029_3147804	1/1	c0001	1380	379	56	75	193	14	39	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	c0002	1380	21	21	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	c0003	1380	10	10	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	c0004	1380	8	8	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	c0005	1380	6	0	0	6	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	c0006	1380	3	0	0	0	0	3	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	c0007	1380	2	1	1	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	c0008	1380	2	0	2	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	c0009	1380	1	0	0	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF214_chr11_6992085_7025346	0/1	c0001	1821	105	30	12	48	5	9	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0002	1821	66	6	5	45	2	8	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0003	1821	56	1	18	25	3	9	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0004	1821	48	26	10	5	4	3	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0005	1821	44	0	3	32	2	7	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	1/0	c0006	1821	20	11	4	0	0	4	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0007	1821	7	7	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0008	1821	7	7	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0009	1821	5	1	4	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0010	1821	4	2	2	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0011	1821	1	0	1	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0012	1821	1	0	1	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0013	1821	1	0	0	1	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	c0014	1821	1	1	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF215_chr11_6921426_6963047	0/0	c0001	1554	171	32	40	61	8	30	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0002	1554	89	6	19	55	4	5	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/1	c0003	1554	82	36	6	33	3	3	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	1/0	c0004	1554	58	15	6	29	1	6	copy fasta	ZNF215	chr11	6921426	6963047