JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF215_chr11_6921426_6963047	0/0	c0005	1554	20	0	0	20	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0006	1554	15	0	0	14	0	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0007	1554	6	0	0	6	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0008	1554	5	1	0	4	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0009	1554	3	2	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0010	1554	3	0	0	3	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0011	1554	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0012	1554	1	0	0	1	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0013	1554	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0014	1554	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0015	1554	1	0	0	1	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0016	1554	1	0	0	0	0	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0017	1554	1	0	0	1	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	c0018	1554	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF217_chr20_53562071_53598839	1/0	c0001	3147	218	33	37	110	7	30	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0002	3147	62	11	8	34	2	7	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0003	3147	30	0	2	23	2	3	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0004	3147	19	0	9	4	0	6	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0005	3147	14	14	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0006	3147	11	0	2	9	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0007	3147	9	7	2	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0008	3147	6	6	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0009	3147	6	0	5	0	0	1	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0010	3147	5	5	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0011	3147	5	5	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0012	3147	4	4	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/1	c0013	3147	3	0	1	0	1	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0014	3147	3	2	1	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0015	3147	2	0	0	0	2	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0016	3147	2	0	0	0	0	2	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0017	3147	2	2	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0018	3147	2	0	0	0	2	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0019	3147	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0020	3147	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0021	3147	1	0	1	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0022	3147	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0023	3147	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0024	3147	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0025	3147	1	0	0	0	0	1	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0026	3147	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0027	3147	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0028	3147	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	c0029	3147	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF219_chr14_21085077_21103655	1/0	c0001	2169	256	17	51	137	11	39	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0002	2163	36	8	20	4	0	4	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/1	c0003	2163	31	8	2	16	1	3	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0004	2169	30	29	1	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0005	2169	11	11	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0006	2169	10	10	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0007	2169	6	0	0	6	0	0	copy fasta	ZNF219	chr14	21085077	21103655