JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRSK1_chr19_55278997_55317562	0/0	c0010	2337	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0011	2337	1	0	0	0	1	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0012	2337	1	0	0	0	1	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0013	2337	1	1	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0014	2337	1	0	1	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0015	2337	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0016	2337	1	0	0	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0017	2337	1	0	0	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0018	2337	1	1	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	c0019	2337	1	1	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK2_chr11_1384934_1467689	0/1	c0001	2211	180	53	40	51	13	22	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	1/0	c0002	2211	136	25	26	64	1	19	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0003	2211	20	7	1	12	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0004	2211	6	0	0	6	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0005	2211	3	2	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0006	2211	2	2	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0007	2211	2	0	0	0	2	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0008	2211	2	2	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0009	2211	1	0	0	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0010	2211	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0011	2211	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0012	2211	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0013	2186	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0014	2211	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0015	2211	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0016	2211	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	c0017	2211	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRWD1_chr21_39180482_39318632	0/0	c0001	6810	136	27	31	58	6	14	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	1/0	c0002	6810	65	0	8	46	1	9	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0003	6810	43	18	3	14	0	8	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/1	c0004	6810	39	7	13	10	3	5	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0005	6810	20	18	2	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0006	6810	5	1	2	2	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0007	6810	4	4	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0008	6810	4	0	0	4	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0009	6810	3	3	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0010	6810	2	0	1	1	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0011	6810	2	0	2	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0012	6810	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0013	6810	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0014	6810	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0015	6810	1	0	0	0	0	1	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0016	6810	1	0	0	1	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0017	6810	1	0	0	0	0	1	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0018	6810	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0019	6810	1	0	0	1	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0020	6810	1	0	0	0	0	1	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0021	6810	1	0	0	1	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0022	6810	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0023	6810	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632