JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF219_chr14_21085077_21103655	0/0	c0008	2169	5	5	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0009	2163	2	0	0	0	0	2	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0010	2169	2	2	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0011	2169	1	0	0	1	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0012	2169	1	0	0	1	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0013	2169	1	0	0	1	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0014	2163	1	1	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	c0015	2169	1	1	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF221_chr19_43946228_43972709	0/1	c0001	1854	317	45	72	149	13	37	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0002	1854	48	2	4	37	1	4	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0003	1854	28	21	1	0	2	4	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0004	1854	10	7	2	1	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0005	1854	10	10	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0006	1854	4	4	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0007	1854	4	4	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0008	1854	3	3	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0009	1854	1	0	0	1	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0010	1854	1	1	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0011	1854	1	0	0	1	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0012	1854	1	0	0	1	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0013	1854	1	0	1	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0014	1854	1	1	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0015	1854	1	1	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	1/0	c0016	1854	1	0	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0017	1854	1	1	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	c0018	1854	1	0	0	0	0	1	copy fasta	ZNF221	chr19	43946228	43972709
ZNF222_chr19_44020379_44038110	1/0	c0001	1476	227	45	44	117	5	15	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/1	c0002	1476	143	16	27	74	8	17	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0003	1476	19	19	0	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0004	1476	10	9	1	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0005	1476	6	0	0	6	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0006	1476	4	4	0	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0007	1476	2	0	2	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0008	1476	2	2	0	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0009	1476	1	0	0	1	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0010	1476	1	0	0	1	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0011	1476	1	0	1	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0012	1476	1	0	0	1	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0013	1476	1	0	1	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0014	1476	1	0	1	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0015	1476	1	0	1	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0016	1476	1	1	0	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	c0017	1476	1	0	0	0	1	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF223_chr19_44047036_44072999	0/1	c0001	1449	149	15	27	75	8	23	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	1/0	c0002	1449	114	16	20	69	3	5	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0003	1449	113	29	22	50	4	8	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0004	1449	17	16	1	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0005	1449	13	7	1	1	1	3	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0006	1449	10	10	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0007	1447	6	0	0	6	0	0	copy fasta	ZNF223	chr19	44047036	44072999