JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF223_chr19_44047036_44072999	0/0	c0008	1449	5	0	2	0	2	1	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0009	1449	1	0	1	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0010	1449	1	1	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0011	1449	1	0	0	1	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0012	1449	1	1	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0013	1449	1	1	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0014	1449	1	0	0	0	0	1	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	c0015	1449	1	0	0	0	0	1	copy fasta	ZNF223	chr19	44047036	44072999
ZNF224_chr19_44089361_44114826	0/1	c0001	2124	160	31	26	78	7	17	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	1/0	c0002	2124	99	7	16	62	3	10	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0003	2124	67	21	16	28	0	2	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0004	2124	27	0	3	20	1	3	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0005	2124	12	12	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0006	2124	7	2	0	5	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0007	2124	6	5	1	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0008	2124	4	0	0	1	1	2	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0009	2124	4	0	0	4	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0010	2124	3	0	3	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0011	2124	3	3	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0012	2124	3	0	1	0	1	1	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0013	2124	2	2	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0014	2124	2	2	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0015	2124	2	0	2	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0016	2124	2	2	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0017	2124	2	0	0	0	1	1	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0018	2124	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0019	2114	1	0	1	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0020	2124	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0021	2124	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0022	2124	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0023	2124	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0024	2124	1	0	0	0	1	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0025	2124	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0026	2124	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0027	2124	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0028	2137	1	0	0	0	1	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0029	2124	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0030	2124	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0031	2124	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0032	2124	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0033	2124	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0034	2124	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0035	2208	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	c0036	2124	1	0	1	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF225_chr19_44108399_44139822	1/1	c0001	2121	310	68	55	141	13	31	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0002	2121	51	6	13	30	0	2	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0003	2121	8	4	0	1	1	2	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0004	2121	8	0	0	8	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0005	2121	5	4	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0006	2121	4	4	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822