JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF225_chr19_44108399_44139822	0/0	c0007	2121	2	2	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0008	2121	2	2	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0009	2121	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0010	2121	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0011	2121	1	0	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0012	2121	1	0	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0013	2121	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0014	2121	1	0	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0015	2121	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0016	2121	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0017	2121	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0018	2121	1	0	0	0	0	1	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0019	2121	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0020	2068	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0021	2121	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	c0022	2121	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF226_chr19_44160100_44182685	1/1	c0001	2412	284	35	56	147	9	35	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0002	2412	73	28	17	27	1	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0003	2412	13	13	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0004	2413	8	0	0	8	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0005	2412	5	5	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0006	2412	5	5	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0007	2412	2	0	2	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0008	2412	1	0	0	1	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0009	2412	1	1	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0010	2412	1	1	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0011	2412	1	0	0	0	0	1	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0012	2412	1	0	0	1	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0013	2412	1	0	1	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0014	2412	1	1	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	c0015	2412	1	1	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF227_chr19_44207532_44242268	1/1	c0001	2400	154	29	25	82	3	13	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0002	2400	141	10	31	71	8	21	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0003	2400	66	26	16	23	1	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0004	2400	8	6	2	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0005	2400	7	0	0	7	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0006	2400	6	6	0	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0007	2400	6	5	1	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0008	2400	3	1	0	2	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0009	2400	2	2	0	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0010	2400	2	2	0	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0011	2400	1	0	1	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0012	2400	1	0	1	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0013	2400	1	0	0	1	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0014	2400	1	1	0	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0015	2400	1	1	0	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0016	2400	1	0	1	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	c0017	2400	1	1	0	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF229_chr19_44421254_44453472	1/0	c0001	2478	143	56	28	38	7	13	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0002	2478	98	7	8	64	3	16	copy fasta	ZNF229	chr19	44421254	44453472